sugar._io package

sugar._io – Input/Output support for different sequence and feature file formats

IO support is discovered via plugins, you can simply install your own plugins.

Submodules

main	Main IO functions, read(), iter_(), write(), read_fts(), write_fts()
clustal	Clustal IO
embl	EMBL flat file reader for ENA and UniProt
fasta	FASTA IO
genbank	GenBank reader
meme	Read support for file formats associated with the MEME Suite
sjson	SJson IO, custom lossless sugar format
stockholm	Stockholm IO
tab.blast	BLAST reader for output generated with outfmt 7 (preferred), 6 or 10
tab.core	Generic tabular feature reader that is used by several plugins
tab.infernal	Infernal reader for output generated with tblout fmt 1, 2, 3
tab.mmseqs	MMseqs2 reader for output generated with option fmtmode 4 (preferred) or 0
tab.xsv	TSV, CSV and XSV file formats IO